Publications
If you've used OpenProt, please cite our latest publication:
OpenProt 2.0 builds a path to the functional characterization of alternative proteins. Leblanc S, Yala F, Provencher N, Lucier JF, Levesque M, Lapointe X, Jacques JF, Fournier I, Salzet M, Ouangraoua A, Scott MS, Boisvert FM, Brunet MA, Roucou X (2024). Nucleic Acids Res. https://doi.org/10.1093/nar/gkad1050
OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases. Guilloy N, Brunet MA, Leblanc S, Jacques JF, Hardy MP, Ehx G, Lanoix J, Thibault P, Perreault C, Roucou X. J Proteome Res. 2023 May 5;22(5):1492-1500. doi:
10.1021/acs.jproteome.3c00054 Newfound Coding Potential of Transcripts Unveils Missing Members of Human Protein Communities. Leblanc S, Brunet MA, Jacques JF, Lekehal AM, Duclos A, Tremblay A, Bruggeman-Gascon A, Samandi S, Brunelle M, Cohen AA, Scott MS, Roucou X. Genomics Proteomics Bioinformatics. 2022 Sep 29:S1672-0229(22)00124-3. doi:
10.1016/j.gpb.2022.09.008 OpenVar: functional annotation of variants in non-canonical open reading frames. Brunet MA, Leblanc S, Roucou X. Cell Biosci. 2022 Aug 14;12(1):130. doi:
10.1186/s13578-022-00871-x OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes. Brunet MA, Lucier JF, Levesque M, Leblanc S, Jacques JF, Al-Saedi HRH, Guilloy N, Grenier F, Avino M, Fournier I, Salzet M, Ouangraoua A, Scott MS, Boisvert FM, Roucou X. Nucleic Acids Res. 2021 Jan 8;49(D1):D380-D388.
https://doi.org/10.1093/nar/gkaa1036 How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource. Brunet MA, Lekehal AM, Roucou X. Curr Protoc Bioinformatics. 2020 Sep;71(1):e103. doi:
10.1002/cpbi.103 OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes. Brunet MA, Brunelle M, Lucier JF, Delcourt V, Levesque M, Grenier F, Samandi S, Leblanc S, Aguilar JD, Dufour P, Jacques JF, Fournier I, Ouangraoua A, Scott MS, Boisvert FM, Roucou X. Nucleic Acids Res. 2019 Jan 8;47(D1):D403-D410. doi:
10.1093/nar/gky936